| DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction Rampal S. Etienne , Luis Valente , Albert B. Phillimore , Bart Haegeman , Joshua W. Lambert , Pedro Santos Neves , Shu Xie , Richèl J.C. Bilderbeek , Hanno Hildenbrandt , Torsten Hauffe , Giovanni Laudanno , Nadiah Kristensen , Raphael Scherrer |
| GenomeAdmixR | Simulate Admixture of Genomes Thijs Janzen , Fernando Diaz G. , Richèl J.C. Bilderbeek |
| Peptides | Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences Daniel Osorio , Paola Rondon-Villarreal , Rodrigo Torres , J. Sebastian Paez , Luis Pedro Coelho , Richèl J.C. Bilderbeek , Florian C. Sigloch |
| babette | Control 'BEAST2' Richèl J.C. Bilderbeek , Joëlle Barido-Sottani , David Winter , Jason Griffiths , Giovanni Laudanno |
| beastier | Call 'BEAST2' Richèl J.C. Bilderbeek , Joëlle Barido-Sottani , David Winter , Jason Griffiths , Thijs Janzen |
| beautier | 'BEAUti' from R Richèl J.C. Bilderbeek , Joëlle Barido-Sottani , David Winter , Paul Van Els , Raphael Scherrer , Yacine B. Chehida , Katharine S. Walter , Gary Napier , Jason Griffiths , Thijs Janzen , Pedro Taucce , Olivier Roy , Jana Riederer |
| markovchain | Easy Handling Discrete Time Markov Chains Giorgio Alfredo Spedicato , Tae Seung Kang , Sai Bhargav Yalamanchi , Mildenberger Thoralf , Deepak Yadav , Ignacio Cordón , Vandit Jain , Toni Giorgino , Richèl J.C. Bilderbeek , Daniel Ebbert , Shreyash Maheshwari |
| mauricer | Work with 'BEAST2' Packages Richèl J.C. Bilderbeek |
| mcbette | Model Comparison Using 'babette' Richèl J.C. Bilderbeek , Joëlle Barido-Sottani , Vikram Baliga |
| mhcnuggetsr | Call MHCnuggets Richèl J.C. Bilderbeek |
| nLTT | Calculate the NLTT Statistic Thijs Janzen , Richèl J.C. Bilderbeek , Pedro Neves |
| netmhc2pan | Interface to 'NetMHCIIpan' Richèl J.C. Bilderbeek , Byungkuk Min |
| pirouette | Create a Bayesian Posterior from a Phylogeny Richèl J.C. Bilderbeek , Giovanni Laudanno , Thijs Janzen |
| pureseqtmr | Predict Transmembrane Protein Topology Richèl J.C. Bilderbeek |
| tracerer | Tracer from R Richèl J.C. Bilderbeek , Joëlle Barido-Sottani , David Winter |